SlicerDMRI is an open-source project to improve and extend diffusion magnetic resonance imaging software in 3D Slicer.

Help!

After reviewing the material below, for usage questions please visit the Slicer Discussion Forum.

General Slicer guide

• Slicer training

Tutorials and sample data

• Slicer DTI tutorial (test data) : General DTI overview
• Slicer Neurosurgical Planning tutorial: Interactive DTI tractography in Slicer
• Slicer UKF Tractography tutorial: Multi-fiber tractography for crossing fibers
• Slicer Fiber Bundle Selection and Scalar Measurements tutorial: Tractography selection and measurements for studies
• Slicer CLI Application tutorial: Tractography selection and measurements in command line interface (CLI) mode
• DICOM TR Converter tutorial: Loading and saving tractography as DICOM TR objects.
• (Deprecated) DWIConverter tutorial: diffusion-weighted image data conversion from DICOM to NRRD

For developers

• SlicerDMRI organization github includes Slicer modules and deep learning methods
• Python code to access tensor data from a DTI volume

Acknowledgments

The SlicerDMRI developers gratefully acknowledge funding for this project provided by NIH NCI ITCR U01CA199459 (Open Source Diffusion MRI Technology For Brain Cancer Research).